Shannon Johnson

Infectious disease epidemiologist at DCH / DCH

14

Emails

Jan 2015–Sep 2015

Archive range

14 emails found.

Genesee Lagioneliesis Investigation

To
Unknown recipient
Greetings GCHD, Thank you for the opportunity to speak with you this morning. After being updated on where GCHD is in the investigation process, we have identified same items that need additional details and/or may require additional data gathering efforts, In addition, we've listed areas where we can provide personnel to assist with data collection/analysis 4 xxxEND_PAGE:dhhs03_b1000_3700_3713_04 003704 or aid in communication between the invelved governmental departrnents during the outhreak investigation. At this point, the priorities in the public health investigation are te determing the scope of the outhresk and to define as clearly as possible the characteristics of the cases of Legionnaire’s Disease and Pontiac Fever. These date will be critical to help inform and pravide direction for the environmental side of the investigation. Data being requested by MOCH and/or suesested dats collection needs to be addressed: 1} Please provide the name of the arimary point-of-contact for the overall GCHD legionellasis investigation, 2} The current copy of the GCHD Legionnaires Disease outbreak data collection line list is requested and updates sent to MDCK ona regular basis. 3} Onset dates or astimated onset dates need to be determined far all cases. 4} A current map of the municipal water system needs to be obtained and cases’ residences magped in relation te the water system. 5} The investigation needs a Genesee-specific supplemental questionnaire beyond the MDCH suoplemental form and the 6 questions in the email message dated 10/17/14. §} All previous cases (since 5/1/14) and new cases should be re-interviewed as soon as possible with the new outbreak-specific questionnatre. If cases are not available, then a proxy should be interviewed, ideally sameone fro the same household. 7} To look for cases of milder liness such as Pontiac Fever, the questionnaire should ask if there are other household members who have had a similar respiratory iiness. Any household contacts with legieneilasis- consistent flingss should alse be interviewed with the outbreak-specific quastionnaire. 8} Ciinical culture specimens, in addition to urine antigen testing, should be collected fram: all suspect cases where individuals are seeking medical rare. 3} Hospitals should be queried to determine whether any previously diagnosed cases had respiratory cultures collected and whether any of these culture specimens were retained. if se, it should be requested that these samples be held until a determination on environmental testing can be made. Assistance that MBCH can mravide te Genesee to aid in the outbreak investigation: 3} MDCH can provide language to GCHD for distribution to the medical community regarding the request for ‘cinical respiratory culture collection on all suspect cases of legionellosis (Legionnaire’s Disease and Pantiac Fever}. 2} MDCH staff is available to conduct medical record extraction, as needed. 3} MIOCH staff can assist with data entry inte MOSS, a5 needed. 4} MOCH staff can help with the davelanment of a Genesea-spacific outbreak questionnaire. 5} MOCH is willing to assist with supplemental questionnaire data collection by conducting case Interviews {on previously and/or newly diagnosed cases} and alse by assisting with data analysis, as needed. 8} MOCH can assist with the coordination and communication with MOEQ for specific data requests by GCHD. 7} The MOCH PIO can werk with the GCHD PIO to develop a coordinated public health message ta respand to sublic and media inquiries. W there are other Issues that we have not addressed where our assistance would be helpful, please do not hesitate to ask. We appreciate your efferts and recognize the delicate situation you are dealing during this investigation, We lack forward to continued communication and collaboration with you, Regards, Shannon Johnson Shannon Andrews Johnson, MPH infectious Disease Epideminlogist xxxEND_PAGE:dhhs03_b1000_3700_3713_05 003705 Michigan Dept. ef Community Fle 204 Townsend St &M sth Freer Larne: Ml 48s Phere: S1PSBBR 8655 Fax: STBQSRSHS * ihe xxxEND_PAGE:dhhs03_b1000_3700_3713_06 903706 Data being requested by MDCH and/or suggested data collection needs to be addressed: 1) Please provide the name of the primary point-of-contact for the overall GCHD legionellosis investigation. Shuraag Hasan is {aad on the CO investigation. Jim Henry is the lead on the water system investigation, Qur entire COIRT team is invelved Ip both investigations. Shannon Johnsen will serve as the primary pointcof-contact for MDCH. Shannon will coordinate directly with Shuroag and Jim at GCHR, The current copy of the GCND Legionnaires Disease outbreak data collection line lst is requested and updates sent to MDCH on a regular basis. Let us know the ime fable you are pragasing. We would {ike {9 request a regwdar meeting schedule so we can discuss our mutual findings. The Genesee ling list will serve as the master line list for the outbreak investigation. The Genesee fine list should be provided to MDCH weekly and any data gathered by MBCH will be added. Onset dates ar estimated onset dates need ta be determined for all cases. As discussed during aur call, we can provide estimated anset dates. We would {ee your Inpe afd you prefer we report the anse 2 regarted by the patient, their primary care physician or the {D Fhysician cary a? There are differences. el isase keep this [np pind when reviewing the data. For new cases, the onset date from the patientinterview should be used. Far alder cases, the medical record should he used ta assist in determining the estimated anset date, The Influenza Hospitalization Surveillance Project uses the following recommendations for determining estimated onset dates from medical recards: “tn some cases you will need te calculate the date of onset based an notes in the Acimission H&P or Discharge Summary that indicate that fever or cough began days earlier. a Couple of days = 2 days o Few days = 3 days o Several days=5 days Qo Week = 7 days © For example if a patient is admitted 10/15 (Day ) and the Adrnission H&P indicates the patient complained of fever/cough far “a few” days, then the earliest date of onset of respiratery symptoms is 10/12: 10/14 10/15 | Day Number: —— er ee rset Admission xxxEND_PAGE:dhhs03_b1000_3700_3713_07 003707 xxxEND_PAGE:dhhs03_b1000_3700_3713_08 093708 & a 3} ae if date of onset is provided as a range of dates, use the earliest date as date of onset of respiratory symptoms, a: For example, if a date of onset is given as “3 to five days ago”, Hat the date corresponding te 5 days age.” Gay Number: Onset “Admission A current map of the municipal water system needs te be obtained and cases’ residences mapped | in relation te the water system. As discussed in our call, we are experiencing difficulty t ining ¢ the infarmation we have requested OWS and MOEA. We have sent the FON r the current mas of the municipal water iste. As Miscussed during aur call, we have mapne aur cases fa fook far commmanalities and to identify the proximity of & SENS) hall water advisories. MOCH will communicate with MDEQ about obtaining the water system maz. If you have the information, please provide to MOCH a copy of the boil water acviseries (or dates} and the areas they caver, The investigation needs a Genesee-specific supplemental questionnaire beyond the MOCH Se eats form and the 6 questions in the email message dated 10/17/14. As discuss! By ing aut ta individuals 4 ‘ ally af anyone at MOCH has § salt with, Aisa nce of irrantly . Wie are reac g of our que ; ke limited cary daal witch nm the queshians we Ae seed t conversations with aur MOCH calleages. MBCH doas not have staff with expertise in type 1 water supplies, this falls under the gurview of MDEQ and the local water authority. MDCH is able to advise specifically on legionella related to hurnarn Hiness. The compiled data provided by the cases on the questionnaire will be vite! te directing the focus and scape of potential future environmental tasting. Ageneral supplemental data form developed by MDCH was pravided to Genesee on 10/17/14. MOCH will work with GCHD to develop a Genesee-specific quastionnaire for the outbreak. All previous cases (since 5/1/14) and new cases should be re-interviewed as soon as possible with the new outbreak-specific questionnaire, If cases are not available, then a proxy should be interviewed, ideally someone fram the same household. Ses me notes below. Ta look for cases of milder illness such as Pontiac Fever, the questionnaire should ask if there are other household members who have had a similar respiratory illness. Any househald contacts with legionellosis-consistent illness should alse be interviewed with the outhreak- specific questionnaire. As discussed on the call in the review of our iwesitgadions, we have found this and, we Nave been reperting dvs... and have regarted then iy MOS g ig the xxxEND_PAGE:dhhs03_b1000_3700_3713_09 003709 neon seeacnncerveretiié xxxEND_PAGE:dhhs03_b1000_3700_3713_10 093710 Ee) 4) i for tasting af clinical samples nat only af the patients, but, aise of their Clinica! culture specimens, in addition to urine antigen testing, should be collected from all suspect cases where individuals are seeking medical care. isseel in aur call, (his is what we have requested fram MDC : IRR aad a we requeste te aneiran eenuieom, this may be e very be! iad As detailed in the HAN language provided by MOCH to GCHD, hospitals should collect culture specimens in addition to the urine antigen test. if an isolate of Legionella is found fram the culture, the hospital will send the isolate te the MOCH Bureau of Laboratories for further testing. Hospitals should be queried to determine whether any previously dlagnosed cases had respiratory cultures collected and whether any of these culture specimens were retained. If so, it should be requested that these kee ne ae unt a determination on environmental testing can be mada. This was di PEGE: sting | mare in MDCH can provide language to GCHO for distribution te the medical community regarding the request for cilnical respiratory culture collection on all suspect cases of legionellosis (Legionnaire’s Disease and Pontiac Fever). What we . tasting Fotecals fers saps is cela Faqugsted age NE would f same of Hospitals should be farniliar with testing orstonnlsd for legionella culture specimens. Ifa legionella iselate is found by the hospital, the handling and shipment to Bot for additional tasting is discussed in the language of the HAN. MDCH staff is avataate te conduct medical record extraction, as needed. Medi¢al records are attached in MOSS and we do not seed assistance with this at this time. MDCH staff can assist with data entry into MOSS, as needed, Av this me, we do notneed assistance with this, Mease see the naie Selow., MOCH staff can help with the development of a Genesae-specific authreak questionnaire, We wefcame your participation in the revision af aur Genesee specific questionnaire. We Save already received some helpful Faadeacicl fram our expert consultations. We would like ta have an outhbreak-specific questionnaire finalized by the end of next week: Friday Feb 13th. Per Shuroog, Genesee fs collaborating with Joan Rose from MSU on water xxxEND_PAGE:dhhs03_b1000_3700_3713_11 003711 xxxEND_PAGE:dhhs03_b1000_3700_3713_12 -;, 003712 aks system-specific questions. MDCH will begin creating a questionnaire template to be combined with Genesee’s questions and a final version will be reviewed by both agencies. MDCH is willing to assist with supplemental questionnaire data callectian by conducting case interviews fon previously and/or newly diagnosed cases) and also by assisting with data analysis, as needed. Qur CO nurses can adklrags newly dlagnased cases, We would Hite fo discuss MOCH’s assistance for conducting imerviews with previously dlagenosedsintarsiowed cages. MOCH staff members are available te assist with interviewing older casas. We can discuss this issue further after the questionnaire is completed. MBCKH can assist with the coordination and communication with MDEQ for specific data requests by GCHD. As discussed in our call iNe are requesting MOCH assistance with obtaining information fram MOEG, GCND has sent a FON ietter requesting the infarmation we have ot been alts to obtain regarding fhe water syst ather chaflenges we would request OCH a ip obtaining the information, MDCH will communicate with MOEG about obtaining the water system map. Eve The MDCH PIO can werk with the GCHD PIO to develop a coordinated public health message to respond to public and media inquiries. As discussed in our call, {he water system is an extremely sensitive topic, We are very careful in crafting me we Wil request it. xxxEND_PAGE:dhhs03_b1000_3700_3713_13 003713 SLO EUE EWS SELESECEU RAE SUYECABEC EELS xxxEND_PAGE:dhhs03_b1000_3700_3713_14

RE: Legionella PFGE

To
Unknown recipient
Hi Marty, a hat new one fram yesierday as well, Yas, that would be great, please include Thanks so mach, Shannon

City of Flint water testing results

Hi Steve, You had mentioned in our meeting the other week that you would be able to share the water testing spreadsheet. Would it be possible for us to get a copy of that so we can share it with the Genesee Health Department? | know this was part of the information they were looking for. Thanks for your help. Best, Shannon Andrews Johnson, MPH Infectious Disease Epidemiologist Michigan Dept. of Health and Human Services 201 Townsend St., CVB 5"" Floor Lansing, MI 48913 Phone: 517-335-8165 Fax: 517-335-8263 xxxEND_PAGE:dhhs03_b0321_1174_1174_1

Conference call line

Hi Shyroog, The conference call line for tomorrow’s call from 2:30-3:30pm is: , 1-877-873-8017 ; Access code: 7931338 Thanks, Shannon Shannon Andrews Johnson, MPH Infectious Disease Epidemiologist Michigan Dept. of. Community: Health xxxEND_PAGE:deq26_b240_1890_2019_084 201 Townsend St., CVB5™ Floor Lansing, M1 48913 Phone: 517-335-8165 Fax: 517-335-8263 val xxxEND_PAGE:deq26_b240_1890_2019_085 yt Devereaux, Tracy Jo (DEQ) i a

Genesee County Legionnaires’ Disease investigation update

Shannon and | have worked out estimated illness onset dates for the Legionnaires’ disease cases and these are now displayed in graphs in the attached document. One graph shows the dates by day (keyboard effect) and the second shows the dates by month. When | was speaking with Suzanne C at ELC, she was under the impression that the peak was in September — which it is by MDSS referral date, but plotting by illness onset date shows both August and September were peak months. A lesson is the advantages of why we do epi curves! Lily has successfully completed one interview of the very first case and says she will be doing the second today. Susan xxxEND_PAGE:dhhs03_b0317_1166_1166_1

FW: Legionella Investigation Guidance

Hi Shuroog, i'm forwarding to Shannon in case she hasn't had an opportunity to review. | spoke with her this morning, and it sounds like she has some good ideas about haw to preceed with the investigation and interviewing patients. |’d advise working directly with her on this and then | can review a close to final draft if needed. Thanks! Laurel xxxEND_PAGE:dhhs02_b0554_2097_2100_1 002098

Flint Water Map

Shannon, | As requested per our conversation Wednesday 1/28, attached is a map of the Flint water system to help determine system boundaries. Please note this is a controlled document not subject to FOIA due to security concerns. Please do not make any copies. When you have finished using the map please, destroy/delete in accordance with DTMB requirements. xxxEND_PAGE:deq03_b607_4179_4696_172 Stephen Busch, P.E. Lansing and Jackson District Supervisor Office of Drinking Water and Municipal Assistance MDEQ 517-643-2314 / | | | | ] xxxEND_PAGE:deq03_b607_4179_4696_173 Rennaker, Joanne (DEQ)

Genesee Legionellosis Investigation

To
[email protected] , Behlidsgigchd Us , Mvalacak@eache. Us
Greetings GCHD, Thank you for the opportunity to speak with you this morning. After being updated on where GCHD is in the investigation process, we have identified some items that need additional details and/or may require additional data gathering efforts. In addition, we’ve listed areas where we can provide personnel to assist with data collection/analysis or aid in communication between the involved governmental departments during the outbreak investigation. At this point, the priorities in the public health investigation are to determine the scope of the outbreak and to define as clearly as possible the characteristics of the cases of Legionnaire’s Disease and Pontiac Fever. These data will be critical to help inform and provide direction for the environmental side of the investigation. Data being requested by MDCH and/or suggested data collection needs to be addressed: 1) Please provide the name of the primary point-of-contact for the overall GCHD legionellosis investigation. 2) The current copy of the GCHD Legionnaires Disease outbreak data collection line list is requested and updates sent to MDCH ona regular basis. 3) Onset dates or estimated onset dates need to be determined for all cases. 4) A current map of the municipal water system needs to be obtained and cases’ residences mapped in relation to the water system. 5) The investigation needs a Genesee-specific supplemental questionnaire beyond the MDCH supplemental form and the 6 questions in the email message dated 10/17/14. 6) All previous cases (since 5/1/14) and new cases should be re-interviewed as soon as possible with the new outbreak-specific questionnaire. If cases are not available, then a proxy should be interviewed, ideally someone